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The Fk1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-3-[2-(3,4-dimethoxyphenoxy)ethyl]-5-ethyl-3,10-diazabicyclo[4.3.1]decan-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 37 % PEG-3350, 8 % DMSO, 2 mM ligand, 0.2 M NH4-acetate and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.044 α = 90 b = 54.638 β = 90 c = 56.779 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.8 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.08 56.779 94.2 0.062 0.062 0.072 0.037 10.5 3.6 53393 53393
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.08 1.14 91.5 0.35 0.35 0.204 2.2 3.8 7473
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3O5Q 1.08 20 50708 2617 93.91 0.1518 0.1509 0.1692 0.1919 RANDOM 8.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.12 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.572 r_dihedral_angle_3_deg 12.448 r_dihedral_angle_4_deg 7.392 r_dihedral_angle_1_deg 6.973 r_sphericity_free 5.216 r_scangle_it 3.329 r_sphericity_bonded 2.842 r_scbond_it 2.676 r_mcangle_it 1.816 r_angle_refined_deg 1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.572 r_dihedral_angle_3_deg 12.448 r_dihedral_angle_4_deg 7.392 r_dihedral_angle_1_deg 6.973 r_sphericity_free 5.216 r_scangle_it 3.329 r_sphericity_bonded 2.842 r_scbond_it 2.676 r_mcangle_it 1.816 r_angle_refined_deg 1.72 r_mcbond_it 1.419 r_rigid_bond_restr 1.264 r_angle_other_deg 0.852 r_mcbond_other 0.507 r_chiral_restr 0.331 r_symmetry_vdw_other 0.239 r_nbd_refined 0.205 r_nbd_other 0.191 r_xyhbond_nbd_refined 0.188 r_nbtor_refined 0.181 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.143 r_nbtor_other 0.095 r_bond_refined_d 0.01 r_bond_other_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 982 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 37
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling XDS data reduction XSCALE data reduction