4UI2

Crystal structure of the ternary RGMB-BMP2-NEO1 complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.50.1 M TRIS-HCL PH 8.5, 1.5 M AMMONIUM SULPHATE, 12% (V/V) GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
4.4372

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.08α = 90
b = 120.08β = 90
c = 204.09γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-10-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I03DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.15103.598.60.0820.28.7262452
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.153.2396.11.58.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.1550.0124934124898.580.197790.195910.23609RANDOM133.545
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.465.46-10.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.209
r_dihedral_angle_4_deg23.287
r_dihedral_angle_3_deg16.65
r_long_range_B_refined13.429
r_long_range_B_other13.428
r_scangle_other8.486
r_mcangle_other7.399
r_mcangle_it7.398
r_dihedral_angle_1_deg6.982
r_scbond_it5.274
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.209
r_dihedral_angle_4_deg23.287
r_dihedral_angle_3_deg16.65
r_long_range_B_refined13.429
r_long_range_B_other13.428
r_scangle_other8.486
r_mcangle_other7.399
r_mcangle_it7.398
r_dihedral_angle_1_deg6.982
r_scbond_it5.274
r_scbond_other5.272
r_mcbond_it4.527
r_mcbond_other4.517
r_angle_refined_deg1.683
r_angle_other_deg1.127
r_chiral_restr0.102
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4238
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms73

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing