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Low resolution structure R-spondin-2 (Fu1Fu2) in complex with the ectodomains of LGR5 and ZNRF3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.100 M AMMONIUM ACETATE, 0.600 M SODIUM CHLORIDE, 0.050 M MES PH 6.0, 0.005 M MAGNESIUM SULPHATE
Crystal Properties Matthews coefficient Solvent content 4.61 73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 188.609 α = 90 b = 188.609 β = 90 c = 165.292 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.8 40 99.4 0.16 8.5 5.9 7509 -3 212
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.8 5.37 99.8 1.5 1.5 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 4.8 133.37 7115 393 98.87 0.27215 0.26986 0.31262 0.2801 RANDOM 256.386
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.39 7.39 -14.77
RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 33.745 r_dihedral_angle_2_deg 31.642 r_mcbond_other 21.212 r_mcbond_it 21.21 r_scbond_it 20.934 r_dihedral_angle_3_deg 14.482 r_dihedral_angle_4_deg 13.296 r_dihedral_angle_1_deg 4.757 r_angle_other_deg 3.66 r_angle_refined_deg 0.848
RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 33.745 r_dihedral_angle_2_deg 31.642 r_mcbond_other 21.212 r_mcbond_it 21.21 r_scbond_it 20.934 r_dihedral_angle_3_deg 14.482 r_dihedral_angle_4_deg 13.296 r_dihedral_angle_1_deg 4.757 r_angle_other_deg 3.66 r_angle_refined_deg 0.848 r_chiral_restr 0.051 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5582 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHASER phasing