4TKC

Japanese Marasmius oreades lectin complexed with mannose

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.6	298	0.5M Ammonium sulfate, 0.1M Sodium citrate tribasic dihydrate, 1.0M Lithium sulfate monohydrate, 5% 2-propanol, 0.2M mannose

Crystal Properties
Matthews coefficient	Solvent content
2.17	43.27

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.42	α = 90
b = 58.42	β = 90
c = 57.732	γ = 120

Symmetry
Space Group	P 32 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RIGAKU SATURN A200		2013-07-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SAGA-LS BEAMLINE BL07	1.0	SAGA-LS	BL07

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.29	50.59	99.9	7.2	10.59		29101

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		THROUGHOUT	1.29	50.59	27627	1469	99.9	0.16164	0.15937	0.20688	RANDOM	19.54

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
					-0.01

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	61.362
r_dihedral_angle_2_deg	31.753
r_sphericity_bonded	19.661
r_dihedral_angle_4_deg	13.33
r_dihedral_angle_3_deg	10.863
r_rigid_bond_restr	8.196
r_dihedral_angle_1_deg	7.812
r_scangle_other	5.728
r_long_range_B_refined	5.377
r_long_range_B_other	5.376
r_scbond_it	4.613
r_scbond_other	4.608
r_mcangle_other	3.246
r_mcangle_it	3.215
r_mcbond_it	3.08
r_mcbond_other	2.899
r_angle_refined_deg	1.587
r_angle_other_deg	0.74
r_chiral_restr	0.1
r_gen_planes_refined	0.016
r_bond_refined_d	0.013
r_bond_other_d	0.002
r_gen_planes_other	0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	905
Nucleic Acid Atoms
Solvent Atoms	132
Heterogen Atoms	30

Software

Software
Software Name	Purpose
REFMAC	refinement