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Japanese Marasmius oreades lectin complexed with mannose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 0.5M Ammonium sulfate, 0.1M Sodium citrate tribasic dihydrate, 1.0M Lithium sulfate monohydrate, 5% 2-propanol, 0.2M mannose
Crystal Properties Matthews coefficient Solvent content 2.17 43.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.42 α = 90 b = 58.42 β = 90 c = 57.732 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2013-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SAGA-LS BEAMLINE BL07 1.0 SAGA-LS BL07
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 50.59 99.9 7.2 10.59 29101
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.29 50.59 27627 1469 99.9 0.16164 0.15937 0.1628 0.20688 0.2063 RANDOM 19.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 61.362 r_dihedral_angle_2_deg 31.753 r_sphericity_bonded 19.661 r_dihedral_angle_4_deg 13.33 r_dihedral_angle_3_deg 10.863 r_rigid_bond_restr 8.196 r_dihedral_angle_1_deg 7.812 r_scangle_other 5.728 r_long_range_B_refined 5.377 r_long_range_B_other 5.376
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 61.362 r_dihedral_angle_2_deg 31.753 r_sphericity_bonded 19.661 r_dihedral_angle_4_deg 13.33 r_dihedral_angle_3_deg 10.863 r_rigid_bond_restr 8.196 r_dihedral_angle_1_deg 7.812 r_scangle_other 5.728 r_long_range_B_refined 5.377 r_long_range_B_other 5.376 r_scbond_it 4.613 r_scbond_other 4.608 r_mcangle_other 3.246 r_mcangle_it 3.215 r_mcbond_it 3.08 r_mcbond_other 2.899 r_angle_refined_deg 1.587 r_angle_other_deg 0.74 r_chiral_restr 0.1 r_gen_planes_refined 0.016 r_bond_refined_d 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 905 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement