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Crystal structure of the putative alpha/beta hydrolase family protein from Desulfitobacterium hafniense
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.2 M Ammonium Sulfate, 0.1 M Bis-Tris, 25 % PEG3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.94 36.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.661 α = 90 b = 45.473 β = 90.56 c = 82.787 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD beryllium lenses 2014-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.5 0.12 24.9 7.3 27123 27123 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 93.4 0.6 2.7 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 30 25718 25718 1362 99.18 0.18011 0.17644 0.1903 0.24684 0.2545 RANDOM 36.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.93 -0.38 -0.83 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.774 r_dihedral_angle_3_deg 16.392 r_dihedral_angle_4_deg 13.558 r_dihedral_angle_1_deg 6.324 r_long_range_B_refined 6.265 r_long_range_B_other 6.265 r_scangle_other 3.701 r_scbond_it 2.342 r_scbond_other 2.336 r_mcangle_it 2.268
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.774 r_dihedral_angle_3_deg 16.392 r_dihedral_angle_4_deg 13.558 r_dihedral_angle_1_deg 6.324 r_long_range_B_refined 6.265 r_long_range_B_other 6.265 r_scangle_other 3.701 r_scbond_it 2.342 r_scbond_other 2.336 r_mcangle_it 2.268 r_mcangle_other 2.268 r_angle_refined_deg 1.76 r_mcbond_it 1.464 r_mcbond_other 1.462 r_angle_other_deg 0.854 r_chiral_restr 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3936 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 15
Software Software Software Name Purpose Blu-Ice data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing