X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829263% MPD, 0.1 M Tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
3.5365.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 139.602α = 90
b = 139.602β = 90
c = 138.759γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-02-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.97949DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7120.89999.922490
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.83100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.76021380107199.840.192030.190220.22823RANDOM64.427
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.90.450.9-2.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.945
r_dihedral_angle_4_deg21.802
r_dihedral_angle_3_deg16.841
r_long_range_B_refined9.289
r_long_range_B_other9.288
r_scangle_other7.82
r_dihedral_angle_1_deg6.86
r_scbond_it5.435
r_scbond_other5.435
r_mcangle_it5.243
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.945
r_dihedral_angle_4_deg21.802
r_dihedral_angle_3_deg16.841
r_long_range_B_refined9.289
r_long_range_B_other9.288
r_scangle_other7.82
r_dihedral_angle_1_deg6.86
r_scbond_it5.435
r_scbond_other5.435
r_mcangle_it5.243
r_mcangle_other5.243
r_mcbond_it3.814
r_mcbond_other3.808
r_angle_refined_deg1.796
r_angle_other_deg1.194
r_chiral_restr0.104
r_bond_refined_d0.018
r_gen_planes_refined0.01
r_bond_other_d0.005
r_gen_planes_other0.005
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3240
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
GDAdata collection
MOLREPphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling