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Anti-canine CD28 antibody, 1C6, bound canine CD28
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 1.9M AmSO4, 0.1M Cesium sulfate , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 5.4 77.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.783 α = 90 b = 86.783 β = 90 c = 205.804 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.27 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50 96.9 0.065 0.078 15.1 2.9 26171 25360 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.36 97.5 0.484 2.3 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.3 42.46 25306 24012 1292 96.72 0.25792 0.25609 0.29283 0.2881 RANDOM 84.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2 -0.6 -1.2 3.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.715 r_dihedral_angle_4_deg 34.122 r_long_range_B_refined 19.986 r_long_range_B_other 19.984 r_dihedral_angle_3_deg 19.049 r_scangle_other 14.861 r_mcangle_other 11.934 r_dihedral_angle_1_deg 11.495 r_mcangle_it 11.283 r_scbond_other 10.535
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.715 r_dihedral_angle_4_deg 34.122 r_long_range_B_refined 19.986 r_long_range_B_other 19.984 r_dihedral_angle_3_deg 19.049 r_scangle_other 14.861 r_mcangle_other 11.934 r_dihedral_angle_1_deg 11.495 r_mcangle_it 11.283 r_scbond_other 10.535 r_scbond_it 10.504 r_mcbond_it 7.601 r_mcbond_other 7.601 r_angle_refined_deg 1.391 r_angle_other_deg 0.721 r_chiral_restr 0.066 r_gen_planes_refined 0.014 r_bond_refined_d 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4711 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 174
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling