4QYT

Schizosaccharomyces pombe DJ-1

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.4	298	26-32% PEG4000, 100 MM TRIS-HCL, 200 MM MAGNESIUM CHLORIDE, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
2.05	40.01

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 44.507	α = 89.07
b = 51.913	β = 88.98
c = 82.705	γ = 66.83

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	110	CCD	MARMOSAIC 300 mm CCD		2010-07-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 23-ID-D	0.78	APS	23-ID-D

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.05	87	97.3	0.075	21.6	5.8	309118	309118

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.05	1.09	90.2		0.565	2.1	3.9	28701

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2OR3	1.05	82.69	308911	308911	15603	97	0.11074	0.11074	0.10961	0.13212	RANDOM	15.884

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.2	0.18	-0.26	-0.23	0.16	0.27

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	53.439
r_dihedral_angle_2_deg	37.283
r_dihedral_angle_4_deg	18.581
r_dihedral_angle_3_deg	13.526
r_sphericity_bonded	13.487
r_rigid_bond_restr	13.033
r_dihedral_angle_1_deg	6.94
r_long_range_B_refined	3.867
r_long_range_B_other	3.795
r_scangle_other	3.419
r_scbond_it	3.183
r_scbond_other	3.183
r_mcangle_it	2.172
r_mcangle_other	2.172
r_mcbond_it	1.877
r_mcbond_other	1.876
r_angle_refined_deg	1.685
r_angle_other_deg	0.958
r_chiral_restr	0.124
r_gen_planes_refined	0.02
r_bond_refined_d	0.012
r_gen_planes_other	0.011
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5904
Nucleic Acid Atoms
Solvent Atoms	903
Heterogen Atoms	37

Software

Software
Software Name	Purpose
JBluIce-EPICS	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling