4QY5

Crystal structures of chimeric beta-lactamase cTEM-19m showing different conformations


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.529530% PEG 4000, 0.2M magnesium chloride, 0.1M TrisHCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.0239.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.52α = 90
b = 58.21β = 90
c = 109.5γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002011-08-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.97949CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.551.499.90.06220.97.2381953819512.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5499.30.8412.27.12767

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4ZG41.50151.43621236212192399.850.112830.112830.110140.16101RANDOM18.022
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.070.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.137
r_sphericity_free27.51
r_dihedral_angle_4_deg17.673
r_dihedral_angle_3_deg12.124
r_sphericity_bonded10.049
r_dihedral_angle_1_deg5.577
r_scangle_other4.896
r_rigid_bond_restr4.665
r_long_range_B_refined4.636
r_scbond_it4.621
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.137
r_sphericity_free27.51
r_dihedral_angle_4_deg17.673
r_dihedral_angle_3_deg12.124
r_sphericity_bonded10.049
r_dihedral_angle_1_deg5.577
r_scangle_other4.896
r_rigid_bond_restr4.665
r_long_range_B_refined4.636
r_scbond_it4.621
r_scbond_other4.621
r_long_range_B_other4.065
r_mcangle_it2.198
r_mcangle_other2.198
r_mcbond_it2.031
r_mcbond_other2.031
r_angle_refined_deg1.759
r_angle_other_deg0.917
r_chiral_restr0.122
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2009
Nucleic Acid Atoms
Solvent Atoms317
Heterogen Atoms7

Software

Software
Software NamePurpose
MxDCdata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling