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Structure of the Human Sjogren Larsson Syndrome enzyme fatty aldehyde dehydrogenase (FALDH)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3SZA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 9.5 298 0.2M Li2SO4, 0.1M CHES pH9.5, 1.0M K/Na Tartrate, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.75 55.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.137 α = 90 b = 98.582 β = 90 c = 145.703 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97625 SOLEIL PROXIMA 1 2 SYNCHROTRON ESRF BEAMLINE ID14-4 0.976 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 30 99.7 66310 66111 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3SZA 2.1 30 66111 62756 3355 97.13 0.19962 0.19962 0.1984 0.2058 0.22257 0.226 RANDOM 43.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 -0.4 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.001 r_dihedral_angle_4_deg 17.301 r_dihedral_angle_3_deg 14.607 r_long_range_B_other 9.658 r_long_range_B_refined 9.649 r_scangle_other 8.431 r_dihedral_angle_1_deg 6.246 r_scbond_it 5.734 r_scbond_other 5.734 r_mcangle_it 4.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.001 r_dihedral_angle_4_deg 17.301 r_dihedral_angle_3_deg 14.607 r_long_range_B_other 9.658 r_long_range_B_refined 9.649 r_scangle_other 8.431 r_dihedral_angle_1_deg 6.246 r_scbond_it 5.734 r_scbond_other 5.734 r_mcangle_it 4.321 r_mcangle_other 4.321 r_mcbond_it 3.43 r_mcbond_other 3.427 r_angle_refined_deg 1.872 r_angle_other_deg 0.916 r_chiral_restr 0.115 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7314 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling