☰ Navigation Tabs
Phospho-glucan bound structure of starch phosphatase Starch EXcess4 reveals the mechanism for C6-specificty
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NME PDB ENTRY 3NME
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.2M magnesium chloride, 20% PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 46.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.475 α = 90 b = 77.893 β = 90 c = 117.213 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MARMOSAIC 300 mm CCD 2012-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.00 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 95.2 37915 36096 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3NME 1.65 19.43 36064 34257 1807 0.17909 0.17706 0.21763 0.2573 RANDOM 24.514
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.068 r_dihedral_angle_4_deg 16.045 r_dihedral_angle_3_deg 12.954 r_dihedral_angle_1_deg 5.626 r_long_range_B_refined 5.046 r_long_range_B_other 4.635 r_scangle_other 2.577 r_mcangle_other 1.867 r_mcangle_it 1.865 r_scbond_it 1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.068 r_dihedral_angle_4_deg 16.045 r_dihedral_angle_3_deg 12.954 r_dihedral_angle_1_deg 5.626 r_long_range_B_refined 5.046 r_long_range_B_other 4.635 r_scangle_other 2.577 r_mcangle_other 1.867 r_mcangle_it 1.865 r_scbond_it 1.61 r_scbond_other 1.61 r_angle_refined_deg 1.517 r_angle_other_deg 1.387 r_mcbond_it 1.135 r_mcbond_other 1.124 r_chiral_restr 0.125 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2343 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 79
Software Software Software Name Purpose HKL-2000 data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing