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Bombyx mori lipoprotein 6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 10% isopropanol, 10% PEG 3350, 0.1 M MES
Crystal Properties Matthews coefficient Solvent content 2.62 53.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.21 α = 90 b = 85.75 β = 104.84 c = 104.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 0.976 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.05 94.9 0.048 22.32 6.44 124752 123486
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 73 0.55 3.48 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 47 123486 1265 94.94 0.16147 0.16126 0.1713 0.18264 0.1968 RANDOM 27.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.36 -0.27 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.688 r_dihedral_angle_4_deg 14.991 r_dihedral_angle_3_deg 12.679 r_long_range_B_refined 7.333 r_long_range_B_other 7.333 r_dihedral_angle_1_deg 6.529 r_scangle_other 4.041 r_mcangle_it 2.741 r_mcangle_other 2.741 r_scbond_it 2.641
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.688 r_dihedral_angle_4_deg 14.991 r_dihedral_angle_3_deg 12.679 r_long_range_B_refined 7.333 r_long_range_B_other 7.333 r_dihedral_angle_1_deg 6.529 r_scangle_other 4.041 r_mcangle_it 2.741 r_mcangle_other 2.741 r_scbond_it 2.641 r_scbond_other 2.637 r_mcbond_it 1.858 r_mcbond_other 1.856 r_angle_refined_deg 1.528 r_angle_other_deg 1.489 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_bond_other_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9779 Nucleic Acid Atoms Solvent Atoms 1131 Heterogen Atoms 87
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement