4P5I

Crystal structure of the chemokine binding protein from orf virus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7289CRYSTALLIZATION DROPLETS CONSISTED OF 3 UL ORFV CKBP (12 MG ML-1 IN 20 MM HEPES PH 7.0, 1 MM DTT) PLUS 3.0 UL OF A SOLUTION CONTAINING 100 MM L-ARG IN 1.8 M AMMONIUM CITRATE TRIBASIC PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
Crystal Properties
Matthews coefficientSolvent content
469.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.25α = 90
b = 76.25β = 90
c = 281.94γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42009-08-16MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.9541, 1.0346, 1.0403, 1.0267Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.138.28699.70.0530.06326.713.629375329.86
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.2199.90.5770.5771.313.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.2538.282404878299.80.2070.2060.233
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.06541.0654-2.1309
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d16.07
f_angle_d1.219
f_chiral_restr0.085
f_bond_d0.009
f_plane_restr0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1852
Nucleic Acid Atoms
Solvent Atoms174
Heterogen Atoms42

Software

Software
Software NamePurpose
SOLVEphasing
PHENIXrefinement
XDSdata reduction
SCALAdata scaling