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Structure of ancestral PyrR protein (PLUMPyrR)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 40% PEG-300, 0.1M Tris pH 7.0, 5% PEG-1000
Crystal Properties Matthews coefficient Solvent content 2.32 46.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.96 α = 90 b = 57.24 β = 127.47 c = 54 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2013-05-07 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 42.86 99 11.5 6.7 20089
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 42.86 19065 1023 98.91 0.16669 0.16425 0.1765 0.2124 0.2286 RANDOM 28.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 0.42 -1.11 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.448 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 14.912 r_long_range_B_refined 9.742 r_long_range_B_other 9.742 r_scangle_other 7.382 r_dihedral_angle_1_deg 6.569 r_scbond_it 4.648 r_scbond_other 4.647 r_mcangle_it 4.581
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.448 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 14.912 r_long_range_B_refined 9.742 r_long_range_B_other 9.742 r_scangle_other 7.382 r_dihedral_angle_1_deg 6.569 r_scbond_it 4.648 r_scbond_other 4.647 r_mcangle_it 4.581 r_mcangle_other 4.579 r_mcbond_it 2.966 r_mcbond_other 2.955 r_angle_refined_deg 1.94 r_angle_other_deg 0.928 r_chiral_restr 0.132 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1397 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement