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Methanobactin production by methanotrophic bacteria and their structural diversity from Methylosinus strains: Insights into copper release
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 1.1 M Sodium Malonate, 100 mM Hepes pH 7.0, 0.5% v/v Jeffamine ED-2001, 0.5% w/v Octyl-beta-D-glucoside, Crystal were cryoprotected with the above condition supplemented with 20% glycerol.
Crystal Properties Matthews coefficient Solvent content 2.65 53.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.72 α = 90 b = 39.42 β = 90 c = 40.24 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-11-21 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.98 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 28.16 99 0.087 11.3 6 3677 2 17.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 94.1 0.342 3.4 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 28.16 3512 164 98.61 0.22216 0.22077 0.2219 0.2507 RANDOM 25.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 2.45 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.537 r_dihedral_angle_3_deg 9.969 r_dihedral_angle_1_deg 4.046 r_long_range_B_refined 3.993 r_angle_refined_deg 2.859 r_mcangle_it 1.281 r_scbond_it 0.842 r_mcbond_it 0.795 r_chiral_restr 0.08 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.537 r_dihedral_angle_3_deg 9.969 r_dihedral_angle_1_deg 4.046 r_long_range_B_refined 3.993 r_angle_refined_deg 2.859 r_mcangle_it 1.281 r_scbond_it 0.842 r_mcbond_it 0.795 r_chiral_restr 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 154 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement