4OU6

Crystal structure of DnaT84-153-dT10 ssDNA complex form 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.4850.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.144α = 88.34
b = 47.416β = 86.25
c = 54.135γ = 71.24
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.97930SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9627.5430764

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9627.5429206155996.720.190560.18860.22846RANDOM42.747
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.42-1.651.051.97-1.62-2.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.14
r_dihedral_angle_4_deg14.289
r_dihedral_angle_3_deg12.088
r_long_range_B_refined7.438
r_long_range_B_other7.236
r_dihedral_angle_1_deg4.856
r_scangle_other4.805
r_mcangle_it3.69
r_mcangle_other3.69
r_scbond_it3.059
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.14
r_dihedral_angle_4_deg14.289
r_dihedral_angle_3_deg12.088
r_long_range_B_refined7.438
r_long_range_B_other7.236
r_dihedral_angle_1_deg4.856
r_scangle_other4.805
r_mcangle_it3.69
r_mcangle_other3.69
r_scbond_it3.059
r_scbond_other3.056
r_mcbond_it2.488
r_mcbond_other2.484
r_angle_other_deg1.256
r_angle_refined_deg1.209
r_chiral_restr0.075
r_bond_refined_d0.009
r_gen_planes_other0.008
r_bond_other_d0.007
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2915
Nucleic Acid Atoms200
Solvent Atoms257
Heterogen Atoms

Software

Software
Software NamePurpose
MAR345dtbdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling