4OU6 | pdb_00004ou6

Crystal structure of DnaT84-153-dT10 ssDNA complex form 1

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP			VAPOR DIFFUSION, HANGING DROP

Crystal Properties
Matthews coefficient	Solvent content
2.48	50.48

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 47.144	α = 88.34
b = 47.416	β = 86.25
c = 54.135	γ = 71.24

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray						M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL17U	0.97930	SSRF	BL17U

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.96	27.54					30764

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.96	27.54	29206	1559	96.72	0.19056	0.1886	0.194	0.22846	0.2261	RANDOM	42.747

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.42	-1.65	1.05	1.97	-1.62	-2.46

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.14
r_dihedral_angle_4_deg	14.289
r_dihedral_angle_3_deg	12.088
r_long_range_B_refined	7.438
r_long_range_B_other	7.236
r_dihedral_angle_1_deg	4.856
r_scangle_other	4.805
r_mcangle_it	3.69
r_mcangle_other	3.69
r_scbond_it	3.059
r_scbond_other	3.056
r_mcbond_it	2.488
r_mcbond_other	2.484
r_angle_other_deg	1.256
r_angle_refined_deg	1.209
r_chiral_restr	0.075
r_bond_refined_d	0.009
r_gen_planes_other	0.008
r_bond_other_d	0.007
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2915
Nucleic Acid Atoms	200
Solvent Atoms	257
Heterogen Atoms

Software

Software
Software Name	Purpose
MAR345dtb	data collection
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling