4OQ1

Structure of the Streptococcal ancillary pilin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1 M Bis-Tris, 28% w/v PEG2000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9235.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.58α = 90
b = 65.76β = 110.97
c = 60.42γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2013-02-04MSINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 315r2013-02-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.97923ESRFID29
2SYNCHROTRONESRF BEAMLINE ID14-41.0045ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.8534.63800.1497.16.926430264302.912
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.851.9596.10.50237.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.8534.632643025102132896.750.18820.185520.23692RANDOM29.917
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.580.01-0.43-2.43
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_2_deg34.616
f_dihedral_angle_3_deg13.659
f_dihedral_angle_4_deg11.479
f_long_range_B_refined8.29
f_long_range_B_other8.216
f_dihedral_angle_1_deg8.07
f_scangle_other6.059
f_mcangle_it4.428
f_mcangle_other4.427
f_scbond_it4.03
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_2_deg34.616
f_dihedral_angle_3_deg13.659
f_dihedral_angle_4_deg11.479
f_long_range_B_refined8.29
f_long_range_B_other8.216
f_dihedral_angle_1_deg8.07
f_scangle_other6.059
f_mcangle_it4.428
f_mcangle_other4.427
f_scbond_it4.03
f_scbond_other4.029
f_mcbond_it3.128
f_mcbond_other3.128
f_angle_refined_deg2
f_angle_other_deg0.93
f_chiral_restr0.13
f_bond_refined_d0.022
f_gen_planes_refined0.011
f_bond_other_d0.002
f_gen_planes_other0.001
f_nbd_refined
f_nbd_other
f_nbtor_refined
f_nbtor_other
f_xyhbond_nbd_refined
f_xyhbond_nbd_other
f_metal_ion_refined
f_metal_ion_other
f_symmetry_vdw_refined
f_symmetry_vdw_other
f_symmetry_hbond_refined
f_symmetry_hbond_other
f_symmetry_metal_ion_refined
f_symmetry_metal_ion_other
f_scangle_it
f_rigid_bond_restr
f_sphericity_free
f_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2647
Nucleic Acid Atoms
Solvent Atoms237
Heterogen Atoms

Software

Software
Software NamePurpose
MxCuBEdata collection
SHARPphasing
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling