X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.129313% (w/v) polyethylene glycol (PEG) 8000, 200 mM MgCl2 and 100 mM Bis-Tris buffer, pH 5.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4850.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.93α = 90
b = 211.45β = 102.69
c = 108.35γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2012-05-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.99989SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.448.995.60.0647.78333757-354.586
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4694.70.5611.32

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.448.85174735846299.340.21730.21570.2447RANDOM64.5717
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.390.570.36-2.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.812
r_dihedral_angle_4_deg16.433
r_dihedral_angle_3_deg12.552
r_dihedral_angle_1_deg4.396
r_mcangle_it3.302
r_mcbond_it2.212
r_mcbond_other2.212
r_angle_refined_deg0.683
r_angle_other_deg0.553
r_chiral_restr0.042
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.812
r_dihedral_angle_4_deg16.433
r_dihedral_angle_3_deg12.552
r_dihedral_angle_1_deg4.396
r_mcangle_it3.302
r_mcbond_it2.212
r_mcbond_other2.212
r_angle_refined_deg0.683
r_angle_other_deg0.553
r_chiral_restr0.042
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms29985
Nucleic Acid Atoms
Solvent Atoms475
Heterogen Atoms662

Software

Software
Software NamePurpose
XSCALEdata scaling
PHASERphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DA+data collection
XDSdata reduction