4MDA

Structure of Mos1 transposase catalytic domain and Raltegravir with Mn


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.829022% w/v PEG4000, 100 mM Tris, pH 6.8, 5 mM manganese chloride, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
1.9336.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.58α = 90
b = 44.58β = 90
c = 209.23γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayPIXELDECTRIS PILATUS 6M2011-02-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.9795DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.743.61000.07116.76.824487244872
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.791000.2486.67

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2F7T1.741.0124377124999.890.19880.19660.2415RANDOM19.7396
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.11-0.110.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.966
r_dihedral_angle_4_deg18.644
r_dihedral_angle_3_deg14.691
r_dihedral_angle_1_deg6.268
r_mcangle_it2.97
r_angle_refined_deg2.052
r_mcbond_it1.876
r_mcbond_other1.875
r_angle_other_deg0.918
r_chiral_restr0.259
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.966
r_dihedral_angle_4_deg18.644
r_dihedral_angle_3_deg14.691
r_dihedral_angle_1_deg6.268
r_mcangle_it2.97
r_angle_refined_deg2.052
r_mcbond_it1.876
r_mcbond_other1.875
r_angle_other_deg0.918
r_chiral_restr0.259
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1706
Nucleic Acid Atoms
Solvent Atoms158
Heterogen Atoms34

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction