4MAH

Structure of Aspergillus oryzae AA11 Lytic Polysaccharide Monooxygenase with Zn

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	6	292	10 mM zinc chloride, 100 mM MES, pH 6.0, 20% w/v PEG6000, VAPOR DIFFUSION, temperature 292K

Crystal Properties
Matthews coefficient	Solvent content
2.4	48.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 55.207	α = 90
b = 61.498	β = 90
c = 65.136	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2013-07-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02	1.282	Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.55	28.07	98.7	0.052	0.03	17.7	5.4	32367	32367	1	1	11.2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.55	1.58	94.2		0.37	3.6	4	1499

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.55	28.07	32310	32310	1619	98.33	0.1337	0.1337	0.132	0.1656	RANDOM	20.2941

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.39					-0.38

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_bonded	35.381
r_dihedral_angle_2_deg	30.328
r_sphericity_free	27.17
r_dihedral_angle_4_deg	20.309
r_rigid_bond_restr	10.364
r_dihedral_angle_3_deg	8.892
r_dihedral_angle_1_deg	6.639
r_mcangle_it	4.495
r_mcbond_it	4.413
r_mcbond_other	4.406

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_bonded	35.381
r_dihedral_angle_2_deg	30.328
r_sphericity_free	27.17
r_dihedral_angle_4_deg	20.309
r_rigid_bond_restr	10.364
r_dihedral_angle_3_deg	8.892
r_dihedral_angle_1_deg	6.639
r_mcangle_it	4.495
r_mcbond_it	4.413
r_mcbond_other	4.406
r_angle_refined_deg	1.42
r_angle_other_deg	0.965
r_chiral_restr	0.089
r_bond_refined_d	0.01
r_gen_planes_refined	0.006
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1372
Nucleic Acid Atoms
Solvent Atoms	147
Heterogen Atoms	6

Software

Software
Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
SHELXD	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.