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Structure of Aspergillus oryzae AA11 Lytic Polysaccharide Monooxygenase with Zn
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 292 10 mM zinc chloride, 100 mM MES, pH 6.0, 20% w/v PEG6000, VAPOR DIFFUSION, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.4 48.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.207 α = 90 b = 61.498 β = 90 c = 65.136 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 1.282 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 28.07 98.7 0.052 0.03 17.7 5.4 32367 32367 1 1 11.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 94.2 0.37 3.6 4 1499
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.55 28.07 32310 32310 1619 98.33 0.1337 0.1337 0.132 0.1461 0.1656 0.174 RANDOM 20.2941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 -0.38
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 35.381 r_dihedral_angle_2_deg 30.328 r_sphericity_free 27.17 r_dihedral_angle_4_deg 20.309 r_rigid_bond_restr 10.364 r_dihedral_angle_3_deg 8.892 r_dihedral_angle_1_deg 6.639 r_mcangle_it 4.495 r_mcbond_it 4.413 r_mcbond_other 4.406
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 35.381 r_dihedral_angle_2_deg 30.328 r_sphericity_free 27.17 r_dihedral_angle_4_deg 20.309 r_rigid_bond_restr 10.364 r_dihedral_angle_3_deg 8.892 r_dihedral_angle_1_deg 6.639 r_mcangle_it 4.495 r_mcbond_it 4.413 r_mcbond_other 4.406 r_angle_refined_deg 1.42 r_angle_other_deg 0.965 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1372 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 6
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SHELXD phasing