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Structure of the Y34NS91G double mutant of Dehaloperoxidase from Amphitrite ornata with 2,4,6-trichlorophenol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 28-32% PEG4K, .2M ammonium sulfate, .02M sodium cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.19 43.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.982 α = 90 b = 67.657 β = 90 c = 67.87 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-10-21 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 50 98.8 0.04 20.2 3 26494 26181 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.82 97.9 0.121 2.7 1232
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.78 44.52 35271 26147 1326 98.7 0.204 0.1366 0.1326 0.1451 0.2137 0.2193 RANDOM 26.7159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -0.03 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.425 r_sphericity_free 30.633 r_dihedral_angle_4_deg 23.017 r_sphericity_bonded 14.576 r_dihedral_angle_3_deg 13.605 r_dihedral_angle_1_deg 5.976 r_rigid_bond_restr 5.044 r_mcangle_it 4.595 r_mcbond_it 4.219 r_mcbond_other 4.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.425 r_sphericity_free 30.633 r_dihedral_angle_4_deg 23.017 r_sphericity_bonded 14.576 r_dihedral_angle_3_deg 13.605 r_dihedral_angle_1_deg 5.976 r_rigid_bond_restr 5.044 r_mcangle_it 4.595 r_mcbond_it 4.219 r_mcbond_other 4.197 r_angle_refined_deg 1.742 r_angle_other_deg 1.184 r_chiral_restr 0.145 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.008 r_bond_other_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2145 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 126
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection