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CRYSTAL STRUCTURE of PROTEIN TYROSINE PHOSPHATASE 1B IN COMPLEX WITH AN INHIBITOR [(4-{(2S)-2-(1,3-BENZOXAZOL-2-YL)-2-[(4-FLUOROPHENYL)SULFAMOYL]ETHYL}PHENYL)AMINO](OXO)ACETIC ACID
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1M HEPES PH 7.5, 19% PEG4000 and 10 % v/v 2-propanol, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.83 56.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.89 α = 90 b = 87.89 β = 90 c = 103.68 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Mirrors 2011-08-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.546
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 93.7 0.113 0.113 10.3 2.5 15530
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 93.4 0.407 0.407 2.5 2.1 1519
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 27.74 14683 782 93.85 0.18759 0.18447 0.1932 0.24753 0.253 RANDOM 40.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.49 r_dihedral_angle_4_deg 19.171 r_dihedral_angle_3_deg 17.468 r_dihedral_angle_1_deg 7.577 r_scangle_it 4.155 r_scbond_it 2.836 r_angle_refined_deg 2.335 r_mcangle_it 1.798 r_mcbond_it 1.419 r_angle_other_deg 1.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.49 r_dihedral_angle_4_deg 19.171 r_dihedral_angle_3_deg 17.468 r_dihedral_angle_1_deg 7.577 r_scangle_it 4.155 r_scbond_it 2.836 r_angle_refined_deg 2.335 r_mcangle_it 1.798 r_mcbond_it 1.419 r_angle_other_deg 1.011 r_symmetry_hbond_refined 0.271 r_mcbond_other 0.262 r_nbd_refined 0.241 r_symmetry_vdw_other 0.227 r_nbd_other 0.212 r_xyhbond_nbd_refined 0.174 r_symmetry_vdw_refined 0.168 r_chiral_restr 0.125 r_nbtor_other 0.1 r_bond_refined_d 0.028 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2434 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 34
Software Software Software Name Purpose CrystalClear data collection AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling