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Structure of ATP bound RpMatB-BxBclM chimera B3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FUT PDB ENTRY 4FUT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 triethanolamine (100 mM, pH 8.0), with magnesium sulfate (50 mM), monomethyl polyethylene glycol 5000 (21 %, w/v), and glycerol (4 %, w/v), VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.75 67.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.155 α = 90 b = 173.155 β = 90 c = 47.938 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.98 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 99.9 0.061 0.061 345188 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 100 0.058 0.048 6.086 6.1 2756
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4FUT 2 25 52933 52933 2833 99.6 0.14982 0.14982 0.14833 0.1589 0.17787 0.1886 RANDOM 33.829
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 -0.07 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.449 r_dihedral_angle_4_deg 14.727 r_dihedral_angle_3_deg 11.957 r_dihedral_angle_1_deg 5.218 r_angle_refined_deg 1.169 r_angle_other_deg 0.697 r_chiral_restr 0.063 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.449 r_dihedral_angle_4_deg 14.727 r_dihedral_angle_3_deg 11.957 r_dihedral_angle_1_deg 5.218 r_angle_refined_deg 1.169 r_angle_other_deg 0.697 r_chiral_restr 0.063 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3897 Nucleic Acid Atoms Solvent Atoms 533 Heterogen Atoms 65
Software Software Software Name Purpose HKL-3000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling