X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1LIQUID DIFFUSION8293.15Counter-diffusion method without mixing the protein and precipitant, pH 8, LIQUID DIFFUSION, temperature 293.15K
Crystal Properties
Matthews coefficientSolvent content
2.7254.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 117.824α = 90
b = 81.001β = 96.69
c = 99.529γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDMARMOSAIC 225 mm CCD2011-02-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL41XU0.75SPring-8BL41XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.225093.70.056275120
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.221.25293.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.22502447691295993.650.128940.127040.16458RANDOM15.09
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.190.06-0.17
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free47.343
r_dihedral_angle_2_deg33.283
r_dihedral_angle_4_deg16.315
r_sphericity_bonded14.173
r_dihedral_angle_3_deg12.487
r_rigid_bond_restr9.943
r_scangle_it7.411
r_dihedral_angle_1_deg5.912
r_scbond_it5.325
r_mcangle_it3.567
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free47.343
r_dihedral_angle_2_deg33.283
r_dihedral_angle_4_deg16.315
r_sphericity_bonded14.173
r_dihedral_angle_3_deg12.487
r_rigid_bond_restr9.943
r_scangle_it7.411
r_dihedral_angle_1_deg5.912
r_scbond_it5.325
r_mcangle_it3.567
r_mcbond_it2.65
r_angle_refined_deg2.308
r_chiral_restr0.172
r_bond_refined_d0.025
r_gen_planes_refined0.016
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6102
Nucleic Acid Atoms
Solvent Atoms1015
Heterogen Atoms143

Software

Software
Software NamePurpose
HKL-2000data collection
SHELXSphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling