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Crystal Structure of recombinant human Hexokinase type I with 2-deoxy-Glucose 6-Phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6 277 PEG 4000, PEG 8000, sodium acetate, sodium citrate, pH 6.0, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.97 58.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.98 α = 90 b = 122.09 β = 92.97 c = 120.35 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 35.36 99.3 0.086 8.4 3.82 69139
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74 99 0.293 3.3 3.71 6862
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 35.36 69139 68856 3466 98.92 0.293 0.2406 0.2397 0.2359 0.2578 0.2555 RANDOM 55.3717
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.12 0.04 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.741 r_dihedral_angle_4_deg 16.143 r_dihedral_angle_3_deg 14.207 r_dihedral_angle_1_deg 3.466 r_scangle_it 2.537 r_mcangle_it 1.54 r_scbond_it 1.402 r_angle_refined_deg 0.865 r_mcbond_it 0.813 r_chiral_restr 0.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.741 r_dihedral_angle_4_deg 16.143 r_dihedral_angle_3_deg 14.207 r_dihedral_angle_1_deg 3.466 r_scangle_it 2.537 r_mcangle_it 1.54 r_scbond_it 1.402 r_angle_refined_deg 0.865 r_mcbond_it 0.813 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14066 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 125
Software Software Software Name Purpose d*TREK data reduction REFMAC refinement PDB_EXTRACT data extraction d*TREK data scaling