X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop6277PEG 4000, PEG 8000, sodium acetate, sodium citrate, pH 6.0, hanging drop, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.9758.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.98α = 90
b = 122.09β = 92.97
c = 120.35γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDNOIR-1MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 4.2.2ALS4.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6535.3699.30.0868.43.8269139
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.652.74990.2933.33.716862

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.6535.366913968856346698.920.2930.24060.23970.2578RANDOM55.3717
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.090.120.040.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.741
r_dihedral_angle_4_deg16.143
r_dihedral_angle_3_deg14.207
r_dihedral_angle_1_deg3.466
r_scangle_it2.537
r_mcangle_it1.54
r_scbond_it1.402
r_angle_refined_deg0.865
r_mcbond_it0.813
r_chiral_restr0.056
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.741
r_dihedral_angle_4_deg16.143
r_dihedral_angle_3_deg14.207
r_dihedral_angle_1_deg3.466
r_scangle_it2.537
r_mcangle_it1.54
r_scbond_it1.402
r_angle_refined_deg0.865
r_mcbond_it0.813
r_chiral_restr0.056
r_bond_refined_d0.006
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14066
Nucleic Acid Atoms
Solvent Atoms304
Heterogen Atoms125

Software

Software
Software NamePurpose
d*TREKdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata scaling