4F2J

Crystal structure of ZNF217 bound to DNA, P6522 crystal form


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729320% PEG 3350, 0.2M Sodium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
2VAPOR DIFFUSION, HANGING DROP729320% PEG 3350, 0.2M Sodium sulfate, 10mM Trimethyllead acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.928α = 90
b = 56.928β = 90
c = 242.542γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2011-09-06MSINGLE WAVELENGTH
22x-ray100IMAGE PLATEMAR scanner 345 mm plate2011-09-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.649998.50.0919.32.575177517
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.642.68950.1881.8344

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT2.6448.317467746734499.040.25290.25230.2643RANDOM96.517
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.312.665.31-7.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.747
r_dihedral_angle_3_deg16.056
r_dihedral_angle_4_deg14.995
r_scangle_it10.185
r_scbond_it8.122
r_dihedral_angle_1_deg5.45
r_mcangle_it3.819
r_angle_refined_deg2.318
r_mcbond_it2.263
r_angle_other_deg1.125
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.747
r_dihedral_angle_3_deg16.056
r_dihedral_angle_4_deg14.995
r_scangle_it10.185
r_scbond_it8.122
r_dihedral_angle_1_deg5.45
r_mcangle_it3.819
r_angle_refined_deg2.318
r_mcbond_it2.263
r_angle_other_deg1.125
r_mcbond_other0.569
r_chiral_restr0.083
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms449
Nucleic Acid Atoms406
Solvent Atoms
Heterogen Atoms2

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection