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Nerve Growth Factor in Complex with Fab from mouse mAb 911
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 300 PEG 3350, zinc acetate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.48 50.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.748 α = 104.34 b = 69.931 β = 94.13 c = 83.736 γ = 110.42
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 2006-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 1.0 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 96 0.067 13 2.5 38098 38098 -2 57
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 30.49 37866 37866 1015 100 0.20932 0.20932 0.20804 0.2096 0.2579 0.252 RANDOM 52.337
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.14 0.45 1.74 -0.19 -0.07 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.165 r_mcangle_it 3.669 r_scangle_it 3.547 r_scbond_it 2.323 r_mcbond_it 2.196 r_angle_refined_deg 1.116 r_angle_other_deg 0.768 r_symmetry_vdw_other 0.22 r_nbd_other 0.217 r_symmetry_hbond_refined 0.214
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.165 r_mcangle_it 3.669 r_scangle_it 3.547 r_scbond_it 2.323 r_mcbond_it 2.196 r_angle_refined_deg 1.116 r_angle_other_deg 0.768 r_symmetry_vdw_other 0.22 r_nbd_other 0.217 r_symmetry_hbond_refined 0.214 r_nbd_refined 0.169 r_xyhbond_nbd_refined 0.155 r_symmetry_vdw_refined 0.104 r_nbtor_other 0.082 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8200 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling