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Crystal structure of a DUF4467 family protein (SAV0303) from Staphylococcus aureus subsp. aureus Mu50 at 1.35 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.20M ammonium dihydrogen phosphate, 20.00% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.244 α = 86.06 b = 35.058 β = 79.66 c = 50.073 γ = 71.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator 2012-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 17.689 77.9 0.089 6.7 3.7 49882 49882 12.367
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 67.4 0.885 0.885 0.7 3.6 3208
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 17.689 49737 2509 77.68 0.1379 0.1363 0.1612 0.1673 0.1864 RANDOM 19.6413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.32 0.11 0.66 0.07 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.761 r_dihedral_angle_4_deg 16 r_dihedral_angle_3_deg 13.459 r_sphericity_free 8.431 r_scangle_it 7.223 r_dihedral_angle_1_deg 5.312 r_scbond_it 5 r_sphericity_bonded 4.785 r_mcangle_it 3.868 r_mcbond_it 2.806
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.761 r_dihedral_angle_4_deg 16 r_dihedral_angle_3_deg 13.459 r_sphericity_free 8.431 r_scangle_it 7.223 r_dihedral_angle_1_deg 5.312 r_scbond_it 5 r_sphericity_bonded 4.785 r_mcangle_it 3.868 r_mcbond_it 2.806 r_rigid_bond_restr 2.125 r_mcbond_other 1.924 r_angle_refined_deg 1.581 r_angle_other_deg 0.899 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1636 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 9
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing SCALA data scaling REFMAC refinement MOSFLM data reduction SHELXD phasing