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E-selectin lectin, EGF-like and two SCR domains complexed with Sialyl Lewis X
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G1S PDB ENTRIES 1G1S, 3GOV, 1H04 experimental model PDB 3GOV PDB ENTRIES 1G1S, 3GOV, 1H04 experimental model PDB 1H04 PDB ENTRIES 1G1S, 3GOV, 1H04
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 13 % PEG8000, HEPES, MOPS PH 6.2, CACL2, 10MM SLEX-OTMSE
Crystal Properties Matthews coefficient Solvent content 2.8 56.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.29 α = 76.03 b = 58.67 β = 86.28 c = 58.87 γ = 86.31
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.41 28.28 95.4 0.04 8.8 1.8 25239 2 66.77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.41 2.53 90.2 0.32 2 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1G1S, 3GOV, 1H04 2.41 28.32 25216 1298 96.45 0.2168 0.2148 0.2297 0.2528 0.2703 RANDOM 79.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 14.3105 -0.4928 -0.4253 -6.6601 -6.0333 -7.6504
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 17.78 t_omega_torsion 3.16 t_angle_deg 1.22 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 17.78 t_omega_torsion 3.16 t_angle_deg 1.22 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4358 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 312
Software Software Software Name Purpose BUSTER refinement XDS data reduction SCALA data scaling PHASER phasing