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Crystal structure of mouse protein arginine methyltransferase 7 in complex with SAH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SAME STRUCTURE SOLVED BY SAD USING A CRYSTAL OF THE NATIVE PROTEIN SOAKED WITH THIMEROSAL AND PHASED WITH ANOMALOUS SIGNAL FROM MERCURY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 PEG 20,000 3.2%, PEG 8,000 12.6%, BTP PH 7.0 100 MM, SAH 1 MM, NDSB256 100 MM
Crystal Properties Matthews coefficient Solvent content 2.53 51.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.322 α = 90 b = 97.322 β = 90 c = 168.754 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 99.9 0.08 13.9 8.7 107019 0.5 28.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 99.9 0.5 8.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT SAME STRUCTURE SOLVED BY SAD USING A CRYSTAL OF THE NATIVE PROTEIN SOAKED WITH THIMEROSAL AND PHASED WITH ANOMALOUS SIGNAL FROM MERCURY 1.7 29.353 1.36 89408 4438 99.83 0.1612 0.1597 0.1643 0.1897 0.1931
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.082 f_angle_d 1.131 f_chiral_restr 0.045 f_bond_d 0.007 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5093 Nucleic Acid Atoms Solvent Atoms 692 Heterogen Atoms 52
Software Software Software Name Purpose PHENIX refinement XDS data reduction Aimless data scaling PHASER phasing