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Crystal structure of non symbiotic plant hemoglobin AHb3 (GLB3) from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 1.6 M AMMONIUM SULFATE, 0.1 M TRIS PH 8.2
Crystal Properties Matthews coefficient Solvent content 3.88 68.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.373 α = 90 b = 123.373 β = 90 c = 123.373 γ = 90
Symmetry Space Group P 43 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 50.3 99 0.05 16.4 5.4 31454 -10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.81 99.9 0.77 1.9 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.77 50.42 29824 1574 98.57 0.18675 0.18574 0.1958 0.2053 0.2133 RANDOM 26.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.01 r_dihedral_angle_4_deg 12.865 r_dihedral_angle_3_deg 12.175 r_long_range_B_refined 5.576 r_dihedral_angle_1_deg 5.507 r_long_range_B_other 5.485 r_scangle_other 3.456 r_mcangle_other 3.032 r_mcangle_it 3.03 r_scbond_it 2.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.01 r_dihedral_angle_4_deg 12.865 r_dihedral_angle_3_deg 12.175 r_long_range_B_refined 5.576 r_dihedral_angle_1_deg 5.507 r_long_range_B_other 5.485 r_scangle_other 3.456 r_mcangle_other 3.032 r_mcangle_it 3.03 r_scbond_it 2.274 r_scbond_other 2.267 r_mcbond_it 2.028 r_mcbond_other 2.02 r_angle_refined_deg 1.51 r_angle_other_deg 0.888 r_chiral_restr 0.104 r_bond_refined_d 0.014 r_gen_planes_other 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1228 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling