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Crystal structure of in planta processed AvrRps4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 14-16% 2-METHYL-2,4-PENTANDIOL (MPD) BUFFERED WITH 100 MM SODIUM ACETATE PH 5.1-5.3
Crystal Properties Matthews coefficient Solvent content 2.19 43.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.69 α = 90 b = 64.69 β = 90 c = 73.34 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 56 100 0.09 13.7 5.2 9120
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.32 5.1 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.2 56.02 8412 693 99.92 0.16358 0.16118 0.1857 0.19052 0.207 RANDOM 30
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.33 0.66 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.628 r_dihedral_angle_4_deg 23.867 r_dihedral_angle_3_deg 16.173 r_dihedral_angle_1_deg 4.448 r_scangle_it 4.188 r_scbond_it 2.621 r_angle_refined_deg 1.354 r_mcangle_it 1.316 r_angle_other_deg 0.898 r_mcbond_it 0.686
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.628 r_dihedral_angle_4_deg 23.867 r_dihedral_angle_3_deg 16.173 r_dihedral_angle_1_deg 4.448 r_scangle_it 4.188 r_scbond_it 2.621 r_angle_refined_deg 1.354 r_mcangle_it 1.316 r_angle_other_deg 0.898 r_mcbond_it 0.686 r_mcbond_other 0.205 r_chiral_restr 0.072 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1010 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHENIX phasing