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Crystal structure of the S. cerevisiae Ski2 insertion domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 3.5 M SODIUM FORMATE, 0.1 M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 5.41 77.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 230.463 α = 90 b = 123.139 β = 131.05 c = 153.201 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 96 99.6 0.09 8.4 2.9 50807 1.5 98.25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.43 99.9 0.66 1.5 2.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 3.25 57.159 50773 2577 99.52 0.237 0.2359 0.2372 0.2565 0.2515 113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.4347 -22.0356 4.3694 -0.7124
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.233 f_angle_d 0.354 f_chiral_restr 0.024 f_plane_restr 0.002 f_bond_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9084 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 5
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHENIX phasing SOLVE phasing