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Crystal structures of ferritin mutants reveal diferric-peroxo intermediates
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298.15 Lithium sulfate monohydrate, sodium citrate, ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.1 60.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.816 α = 90 b = 128.816 β = 90 c = 172.247 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298.15 CCD ADSC QUANTUM 270 2013-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 91.6 17 7.7 154787
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.83 19.66 115239 5691 98.86 0.15813 0.15644 0.154 0.19191 0.1835 RANDOM 27.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.52 4.52 -9.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.552 r_dihedral_angle_4_deg 13.792 r_dihedral_angle_3_deg 13.791 r_long_range_B_refined 7.356 r_long_range_B_other 7.034 r_scangle_other 5.62 r_dihedral_angle_1_deg 5.388 r_scbond_it 3.995 r_scbond_other 3.995 r_mcangle_other 3.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.552 r_dihedral_angle_4_deg 13.792 r_dihedral_angle_3_deg 13.791 r_long_range_B_refined 7.356 r_long_range_B_other 7.034 r_scangle_other 5.62 r_dihedral_angle_1_deg 5.388 r_scbond_it 3.995 r_scbond_other 3.995 r_mcangle_other 3.029 r_mcangle_it 3.026 r_mcbond_it 2.538 r_mcbond_other 2.532 r_angle_refined_deg 2.061 r_angle_other_deg 1.057 r_chiral_restr 0.15 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8085 Nucleic Acid Atoms Solvent Atoms 883 Heterogen Atoms 115
Software Software Software Name Purpose REFMAC refinement XDS data scaling PHENIX phasing