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Crystal structure of DOX-P Reductoisomerase fosmidomycin and magnesium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M CHES pH 10, 16% (w/v) PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.89 57.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.55 α = 90 b = 66.55 β = 90 c = 389.479 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9795 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 77.9 100 14.4 12.4 49315
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 64.91 46676 2490 100 0.22632 0.22438 0.225 0.26256 0.257 RANDOM 51.475
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.26 0.63 1.26 -4.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.902 r_dihedral_angle_3_deg 17.115 r_dihedral_angle_4_deg 14.528 r_dihedral_angle_1_deg 6.068 r_long_range_B_refined 5.649 r_long_range_B_other 5.634 r_scangle_other 3.823 r_mcangle_it 3.467 r_mcangle_other 3.467 r_scbond_it 2.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.902 r_dihedral_angle_3_deg 17.115 r_dihedral_angle_4_deg 14.528 r_dihedral_angle_1_deg 6.068 r_long_range_B_refined 5.649 r_long_range_B_other 5.634 r_scangle_other 3.823 r_mcangle_it 3.467 r_mcangle_other 3.467 r_scbond_it 2.54 r_scbond_other 2.538 r_mcbond_it 2.356 r_mcbond_other 2.353 r_angle_refined_deg 1.61 r_angle_other_deg 0.877 r_chiral_restr 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5996 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing