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Crystal structure of Lon ATPase domain from Thermococcus onnurineus NA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 295 0.2M Potassium chloride, 0.01M Magnesium acetate, 0.05M tri-sodium citrate dihydrate pH 4.5, 12% PEG 4000, 5% n-Dodecyl-beta-D-maltoside
Crystal Properties Matthews coefficient Solvent content 1.99 38.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.62 α = 74.61 b = 61.599 β = 87.11 c = 76.321 γ = 83.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2008-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.00000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 50 93.1 23.03 2.3 42270
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.03 41.14 40140 2130 92.94 0.18444 0.18157 0.189 0.2387 0.2382 RANDOM 34.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 1.91 -0.52 -0.52 -0.44 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.898 r_dihedral_angle_4_deg 21.109 r_dihedral_angle_3_deg 17.917 r_long_range_B_refined 8.134 r_long_range_B_other 8.123 r_dihedral_angle_1_deg 6.399 r_scangle_other 5.749 r_mcangle_it 4.253 r_mcangle_other 4.253 r_scbond_it 3.766
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.898 r_dihedral_angle_4_deg 21.109 r_dihedral_angle_3_deg 17.917 r_long_range_B_refined 8.134 r_long_range_B_other 8.123 r_dihedral_angle_1_deg 6.399 r_scangle_other 5.749 r_mcangle_it 4.253 r_mcangle_other 4.253 r_scbond_it 3.766 r_scbond_other 3.764 r_mcbond_it 2.897 r_mcbond_other 2.897 r_angle_refined_deg 1.856 r_angle_other_deg 0.923 r_chiral_restr 0.119 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4960 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing