X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3FFZ3FFZ, 3V0A
experimental modelPDB 3V0A3FFZ, 3V0A

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.62945.0ul sample was equilibrated against 600ul of 6 - 8% PEG 4000 and 0.1M sodium acetate of pH 4.6
Crystal Properties
Matthews coefficientSolvent content
3.7767

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 192.601α = 90
b = 192.601β = 90
c = 286.538γ = 120
Symmetry
Space GroupP 31

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152013-04-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.075NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
135069.82.34.5165586110.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3FFZ, 3V0A3.0549.3133607133459.720.244150.243380.32083RANDOM134.999
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.031.031.03-3.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.42
r_long_range_B_refined30.731
r_long_range_B_other30.731
r_scangle_other21.831
r_mcangle_it19.914
r_mcangle_other19.914
r_dihedral_angle_3_deg18.734
r_dihedral_angle_4_deg17.001
r_scbond_it12.958
r_scbond_other12.957
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.42
r_long_range_B_refined30.731
r_long_range_B_other30.731
r_scangle_other21.831
r_mcangle_it19.914
r_mcangle_other19.914
r_dihedral_angle_3_deg18.734
r_dihedral_angle_4_deg17.001
r_scbond_it12.958
r_scbond_other12.957
r_mcbond_it12.49
r_mcbond_other12.488
r_dihedral_angle_1_deg7.841
r_angle_refined_deg1.438
r_angle_other_deg0.94
r_chiral_restr0.073
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms56949
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing