4ZHB

N-terminal structure of ankyrin repeat-containing protein legA11 from Legionella pneumophila


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52970.1 M MES pH 6.5, 12% PEG 20000
Crystal Properties
Matthews coefficientSolvent content
2.448.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.708α = 90
b = 42.708β = 90
c = 145.715γ = 90
Symmetry
Space GroupP 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2012-10-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97926APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.35092.50.07412.912.73443331841-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3257.50.8827.5951

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.342.7130199161992.60.12770.12610.1588RANDOM16.797
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.28-0.280.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.211
r_sphericity_free34.579
r_dihedral_angle_4_deg12.972
r_dihedral_angle_3_deg10.915
r_sphericity_bonded8.94
r_dihedral_angle_1_deg5.479
r_angle_refined_deg1.395
r_mcangle_it1.208
r_rigid_bond_restr0.988
r_angle_other_deg0.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.211
r_sphericity_free34.579
r_dihedral_angle_4_deg12.972
r_dihedral_angle_3_deg10.915
r_sphericity_bonded8.94
r_dihedral_angle_1_deg5.479
r_angle_refined_deg1.395
r_mcangle_it1.208
r_rigid_bond_restr0.988
r_angle_other_deg0.95
r_mcbond_other0.927
r_mcbond_it0.925
r_chiral_restr0.087
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms888
Nucleic Acid Atoms
Solvent Atoms221
Heterogen Atoms4

Software

Software
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing
SBC-Collectdata collection