Experiment: 4ZG8

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.5	289	100 mM Bis-Tris, pH5.5, 300 mM NaCl 25% PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.52	51.14

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 75.6	α = 90
b = 110.34	β = 90
c = 113.02	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2014-07-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02	0.979	Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.39	22.41	99.7	0.089	0.996	8.7	4.8		188755

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.39	1.41	99.9		0.8	0.697	2.2	4.8	9282

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	3WC3	1.39	22.41	179248	9289	99.58	0.1117	0.1098	0.1479	RANDOM	17.625

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.8			2.72		-1.92

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	41.437
r_dihedral_angle_2_deg	37.292
r_sphericity_bonded	14.951
r_dihedral_angle_3_deg	12.59
r_dihedral_angle_4_deg	11.389
r_dihedral_angle_1_deg	5.627
r_rigid_bond_restr	2.654
r_mcangle_it	2.163
r_mcbond_it	1.869
r_mcbond_other	1.865

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	41.437
r_dihedral_angle_2_deg	37.292
r_sphericity_bonded	14.951
r_dihedral_angle_3_deg	12.59
r_dihedral_angle_4_deg	11.389
r_dihedral_angle_1_deg	5.627
r_rigid_bond_restr	2.654
r_mcangle_it	2.163
r_mcbond_it	1.869
r_mcbond_other	1.865
r_angle_refined_deg	1.702
r_angle_other_deg	1.067
r_chiral_restr	0.116
r_bond_refined_d	0.016
r_gen_planes_refined	0.01
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6603
Nucleic Acid Atoms
Solvent Atoms	1078
Heterogen Atoms	51

Software

Software
Software Name	Purpose
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.