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Crystal Structure of core DNA binding domain of Arabidopsis Thaliana Transcription Factor Ethylene-Insensitive 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.1M HEPES, 25% w/v Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.26 45.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.022 α = 89.46 b = 45.174 β = 77.07 c = 47.571 γ = 71.38
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-01-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9793 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 46.26 96.63 22.81 3.9 23591
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.78 46.26 23591 1270 96.63 0.17652 0.17419 0.21806 0.2372 RANDOM 25.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.48 0.02 0.4 -0.52 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.563 r_dihedral_angle_4_deg 22.531 r_dihedral_angle_1_deg 16.972 r_dihedral_angle_3_deg 16.88 r_long_range_B_refined 6.798 r_long_range_B_other 6.743 r_scangle_other 5.14 r_scbond_it 3.435 r_scbond_other 3.429 r_mcangle_it 2.532
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.563 r_dihedral_angle_4_deg 22.531 r_dihedral_angle_1_deg 16.972 r_dihedral_angle_3_deg 16.88 r_long_range_B_refined 6.798 r_long_range_B_other 6.743 r_scangle_other 5.14 r_scbond_it 3.435 r_scbond_other 3.429 r_mcangle_it 2.532 r_mcangle_other 2.531 r_angle_refined_deg 2.126 r_mcbond_it 1.961 r_mcbond_other 1.959 r_angle_other_deg 0.993 r_chiral_restr 0.125 r_bond_refined_d 0.019 r_gen_planes_refined 0.016 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2103 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling PHASER phasing