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Crystal structure of the hypothetical protein from Ruminiclostridium thermocellum ATCC 27405
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2 M Trimethylamine N-oxide, 0.1 M Tris, 20% PEG2000
Crystal Properties Matthews coefficient Solvent content 2.88 57.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.353 α = 90 b = 141.353 β = 90 c = 112.676 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 30 99.9 0.06 51.7 9.2 14192 14192
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 100 0.61 4.2 9.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.55 30 13496 694 99.61 0.17745 0.17505 0.1812 0.22171 0.2237 RANDOM 64.527
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.02 -1.01 -2.02 6.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.91 r_dihedral_angle_3_deg 17.505 r_dihedral_angle_4_deg 16.9 r_dihedral_angle_1_deg 7.276 r_long_range_B_refined 5.327 r_long_range_B_other 5.323 r_scangle_other 3.922 r_mcangle_it 3.25 r_mcangle_other 3.249 r_scbond_it 2.493
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.91 r_dihedral_angle_3_deg 17.505 r_dihedral_angle_4_deg 16.9 r_dihedral_angle_1_deg 7.276 r_long_range_B_refined 5.327 r_long_range_B_other 5.323 r_scangle_other 3.922 r_mcangle_it 3.25 r_mcangle_other 3.249 r_scbond_it 2.493 r_scbond_other 2.493 r_mcbond_it 2.065 r_mcbond_other 2.064 r_angle_refined_deg 1.733 r_angle_other_deg 1.016 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2619 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement BLU-MAX data collection HKL-3000 data scaling PHENIX phasing