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MIF in complex with 1-(4-methylphenyl)-3-phenylprop-2-yn-1-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MIF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 Tris, ammonium sulfate, isopropanol
Crystal Properties Matthews coefficient Solvent content 3.57 65.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.97 α = 90 b = 105.96 β = 90 c = 106.72 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0809 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 75.2 99.9 0.101 6 6.9 68188
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MIF 2.05 47.66 64645 3450 99.86 0.16928 0.16736 0.1782 0.20534 0.2116 RANDOM 18.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.357 r_dihedral_angle_4_deg 17 r_dihedral_angle_3_deg 11.511 r_dihedral_angle_1_deg 6.332 r_long_range_B_refined 5.835 r_long_range_B_other 5.833 r_scangle_other 4.258 r_scbond_it 3.48 r_scbond_other 3.469 r_angle_other_deg 2.676
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.357 r_dihedral_angle_4_deg 17 r_dihedral_angle_3_deg 11.511 r_dihedral_angle_1_deg 6.332 r_long_range_B_refined 5.835 r_long_range_B_other 5.833 r_scangle_other 4.258 r_scbond_it 3.48 r_scbond_other 3.469 r_angle_other_deg 2.676 r_angle_refined_deg 2.261 r_mcangle_it 2.014 r_mcangle_other 2.013 r_mcbond_it 1.431 r_mcbond_other 1.431 r_chiral_restr 0.165 r_bond_refined_d 0.022 r_gen_planes_refined 0.02 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5216 Nucleic Acid Atoms Solvent Atoms 421 Heterogen Atoms 123
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing