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MIF in complex with 3-(2-furylmethyl)-2-thioxo-1,3-thiazolan-4-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MIF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 Tris, ammonium sulfate, isopropanol
Crystal Properties Matthews coefficient Solvent content 2.71 54.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.68 α = 90 b = 68.06 β = 90 c = 88.03 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0809 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 26.95 98.8 0.062 6.2 6.4 54348
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MIF 1.6 26.95 50956 2734 98.79 0.17975 0.17809 0.1886 0.21016 0.2133 RANDOM 19.485
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.399 r_dihedral_angle_4_deg 14.927 r_dihedral_angle_3_deg 10.716 r_dihedral_angle_1_deg 6.003 r_long_range_B_refined 5.418 r_long_range_B_other 5.28 r_scangle_other 4.08 r_scbond_it 2.998 r_scbond_other 2.912 r_mcangle_it 2.288
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.399 r_dihedral_angle_4_deg 14.927 r_dihedral_angle_3_deg 10.716 r_dihedral_angle_1_deg 6.003 r_long_range_B_refined 5.418 r_long_range_B_other 5.28 r_scangle_other 4.08 r_scbond_it 2.998 r_scbond_other 2.912 r_mcangle_it 2.288 r_mcangle_other 2.287 r_angle_refined_deg 2.122 r_mcbond_other 1.742 r_mcbond_it 1.741 r_angle_other_deg 0.965 r_chiral_restr 0.132 r_bond_refined_d 0.026 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2564 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing