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C. bescii Family 3 pectate lyase double mutant K108A/Q111A in complex with trigalacturonic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris pH 9 and 65.9% MPD
Crystal Properties Matthews coefficient Solvent content 2.11 41.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.82 α = 90 b = 36.43 β = 132.85 c = 100.52 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2014-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.98397 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 50.89 98.5 0.052 25.6 11.6 100777
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 95 0.782 2.3 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.25 50.89 95973 4803 98.3 0.11 0.108 0.1081 0.151 0.151 RANDOM 15.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.17 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.517 r_dihedral_angle_4_deg 32.133 r_sphericity_free 18.812 r_sphericity_bonded 12.545 r_dihedral_angle_3_deg 11.043 r_rigid_bond_restr 7.104 r_dihedral_angle_1_deg 7.017 r_long_range_B_refined 4.708 r_scangle_other 4.508 r_scbond_it 4.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.517 r_dihedral_angle_4_deg 32.133 r_sphericity_free 18.812 r_sphericity_bonded 12.545 r_dihedral_angle_3_deg 11.043 r_rigid_bond_restr 7.104 r_dihedral_angle_1_deg 7.017 r_long_range_B_refined 4.708 r_scangle_other 4.508 r_scbond_it 4.08 r_scbond_other 4.08 r_long_range_B_other 4.069 r_mcangle_other 2.341 r_mcangle_it 2.338 r_angle_refined_deg 2.145 r_mcbond_it 1.885 r_mcbond_other 1.884 r_angle_other_deg 0.956 r_chiral_restr 0.126 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2972 Nucleic Acid Atoms Solvent Atoms 611 Heterogen Atoms 239
Software Software Software Name Purpose REFMAC refinement MOLREP phasing XDS data reduction XSCALE data scaling