X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52910.02M magnesium chloride, 0.1M HEPES, 22% w/v polyacrylic acid 5100 sodium salt, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.3146.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.08α = 90
b = 87.18β = 101.63
c = 47.91γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-05-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97957DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1236.3999.90.0653.45.525075

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT236.3923787127599.860.218830.217890.23643RANDOM31.237
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.440.761.08-3.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.266
r_dihedral_angle_4_deg24.472
r_dihedral_angle_3_deg15.648
r_dihedral_angle_1_deg6.355
r_long_range_B_refined5.913
r_long_range_B_other5.912
r_scangle_other4.267
r_mcangle_other3.255
r_mcangle_it3.253
r_scbond_it3.086
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.266
r_dihedral_angle_4_deg24.472
r_dihedral_angle_3_deg15.648
r_dihedral_angle_1_deg6.355
r_long_range_B_refined5.913
r_long_range_B_other5.912
r_scangle_other4.267
r_mcangle_other3.255
r_mcangle_it3.253
r_scbond_it3.086
r_scbond_other3.084
r_mcbond_it2.419
r_mcbond_other2.412
r_angle_other_deg2.062
r_angle_refined_deg1.817
r_chiral_restr0.099
r_bond_refined_d0.017
r_gen_planes_refined0.009
r_gen_planes_other0.007
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2493
Nucleic Acid Atoms
Solvent Atoms50
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PHENIXphasing
iMOSFLMdata reduction