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Crystal structure of the Atg101-Atg13 complex from fission yeast
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 4M sodium chloride, 0.1M Tris-HCl pH 8.0, 0.2% D-fructose 1,6-diphosphate trisodium salt octahydrate, 0.2% glycerol phosphate disodium salt hydrate, 0.2% L-O-phosphoserine, 0.2% phytic acid sodium salt hydrate, 0.02 M HEPES sodium pH 6.8
Crystal Properties Matthews coefficient Solvent content 2.82 56.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.822 α = 90 b = 83.389 β = 106.22 c = 91.113 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD RAYONIX MX225HE 2013-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000, 1.0070 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 43.75 99.2 0.072 15.7 3.8 11052 11052 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.05 99.6 2.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3 43.74 10666 562 99.2 0.267 0.267 0.2673 0.288 0.2875 RANDOM 92.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -11.79 32.45 0.25 11.54
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24 c_mcangle_it 3.02 c_scangle_it 2.7 c_scbond_it 1.72 c_mcbond_it 1.65 c_angle_deg 1.5 c_improper_angle_d 0.92 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24 c_mcangle_it 3.02 c_scangle_it 2.7 c_scbond_it 1.72 c_mcbond_it 1.65 c_angle_deg 1.5 c_improper_angle_d 0.92 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2643 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CNS refinement REFMAC refinement Coot model building PHASES phasing HKL-2000 data processing HKL-2000 data reduction HKL-2000 data scaling