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Crystal structure of Phycocyanin from marine cyanobacterium Phormidium rubidum sp. A09DM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 18.5% PEG 3350, 0.1 M sodium citrate buffer pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.32 47.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.354 α = 90 b = 102.354 β = 90 c = 109.021 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT TITAN CCD 2013-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OTHER 1.54056
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 19.34 99.7 0.132 0.058 0.99 12 6.1 17802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 100 0.421 0.238 0.822 3.3 4 2372
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 18 16878 908 99.45 0.21 0.2075 0.209 0.2579 0.2598 RANDOM 24.681
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -0.92 -0.92 2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.342 r_dihedral_angle_4_deg 20.988 r_dihedral_angle_3_deg 16.425 r_dihedral_angle_1_deg 5.147 r_angle_refined_deg 2.083 r_angle_other_deg 1.073 r_chiral_restr 0.069 r_gen_planes_other 0.013 r_bond_refined_d 0.011 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.342 r_dihedral_angle_4_deg 20.988 r_dihedral_angle_3_deg 16.425 r_dihedral_angle_1_deg 5.147 r_angle_refined_deg 2.083 r_angle_other_deg 1.073 r_chiral_restr 0.069 r_gen_planes_other 0.013 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4940 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 258
Software Software Software Name Purpose REFMAC refinement Aimless data scaling MOLREP phasing PDB_EXTRACT data extraction Aimless data reduction